Showing posts with label interdisciplinary. Show all posts
Showing posts with label interdisciplinary. Show all posts

Sunday, September 21, 2014

In the News: A link roundup



1) Dr. Kristi Curry Rogers, a biologist and geologist at Macalester College, shares her thoughts on evolution and it's role in the world today. 




2) Dr. Michael Fischbach, a chemist at UCSF, talks to the NYT about the research his lab is conducting on the microbiome, as well as the results of a study his group recently published in the journal Cell

Link to the NY Times article
Link to the study published in the journal Cell


Peter Walter, PhD (right) speaks with UCSF's vice-chancellor of Research Keith Yamamoto, PhD

3) Dr. Peter Walter (above right), a biochemist at UCSF, is the recipient of the 2014 Lasker Basic Medical Research Award. Dr. Walter is sharing this award with Kazutoshi Mori, PhD, a researcher at Kyoto University. 

The two scientists are being honored for their work on the Unfolded Protein Response or UPR, a cellular quality-control system which is believed to play a role in certain neurodegenerative diseases, diabetes, and cancer. This is Walter's second major award of the year--he and Mori also shared the Shaw Prize in May. 


Thursday, May 22, 2014

"Forgive me, scientists, for I have sinned"

Adam Ruben, PhD, author of the book Surviving Your Stupid, Stupid Decision to Go to Grad School has a new post on the Science/AAAS magazine. Follow the link below to read the full post.

http://sciencecareers.sciencemag.org/career_magazine/previous_issues/articles/2014_05_20/caredit.a1400126

Thursday, December 12, 2013

QBC Retreat 2013


My program and several other graduate programs in the Quantitative Biosciences Consortium (QBC) just returned from our annual retreat to Asilomar in Pacific Grove, CA. While there we heard talks from both students and professors, enjoyed humorous skits performed by the second years, and despite the chilly temperatures people braved walks on the beach during conference breaks. 

I feel as though I am sometimes in a chemistry bubble, so it was great to see the research interests of students in other programs. I myself presented at one of the poster sessions. The people who stopped by my poster had lots of positive feedback and suggestions for experiments.  I'm not sure how much time I will have to begin things before the holidays, but I'm excited to try some of these new directions come January! 

Monday, March 18, 2013

Chemical Biology vs. Biological Chemistry

"What is chemical biology and how is that different from biochemistry?"

This is the one question I am often asked at family functions, by other students, and sometimes even by other chemists who are not familiar with the discipline. The answer: it’s complicated!

If you search for "chemical biology" on the internet, the results would include hundreds of websites, college syllabi, and opinion pieces, each attempting to describe the field or explain the methodology used by researchers. And while there are some excellent resources about this field, many more results simply describe the idea that chemical biology is “something chemical” associated with “something biological” (1).

Even the experts, those researchers pushing the frontiers of the field, have difficulty nailing down a unified description of what constitutes chemical biology--some arguing that is is the techniques being utilized while others arguing that it is the type of questions being asked. Personally, I like Christopher Walsh's definition: "The goal [of chemical biology] is a seamless application of chemical principles to decipher complexities in biology and bring scientists trained in chemistry to full engagement on biological projects," (2).


This is how I like to simplify the difference:

Adapted from (3). 

Biological Chemistry (aka Biochemistry): The study of the chemical properties of biological systems.
Traditionally, biochemists study biological systems in living organisms. They are interested in the role and function of biological molecules. Common techniques may include enzyme kinetics, mutagenesis, or pharmacology.

Chemical Biology: Manipulating biological systems using the tools/techniques of chemistry.
Conversely, chemical biologists might better be described as engineers. They want to use the tools of chemistry to study or "tweak" biological systems. Common techniques include directed evolution, metabolic engineering, or rational drug design.


Although I've just spent time developing a distinction between the two fields, many labs and many scientists frequently employ techniques of both in their research. For example, labs that are very skilled at synthesizing organic small molecules might also employ mutagenesis to tweak their enzyme target of interest (4). Or, a graduate student trained in biophysical methodology might elect to do a more chemically-oriented post-doc, applying fresh perspective to new problems.

Working at the intersection of biology and chemistry sometimes has interesting consequences, but I feel that one of the main barriers between these fields is the lack of cross-talk. Advances in one field may be overlooked, simply because the results are presented in an unfamiliar language. In my opinion, this is why interdisciplinary training is so valuable. Training in biochemistry or chemical biology allows scientists not only to "speak the language" of each field, but to apply the best techniques to the most interesting biological questions.




Additional Reading:
1. Thomas, P. "The Chemical Biologists," Harvard Magazine, 2005, 38-47.

References:
1. Mahapatra, A. "Chemistry or Biology? The debate continues..." ACS Chem. Biol. 2009, 4, 969-970.
2. Walsh, CT. "Natural Insights for Chemical Biologists,"Nat. Chem. Biol. 2005, 1, 122-144.
3. Calderone, CT. BIOL/CHEM 359. Lecture on Chemical Biology. Presented at Macalester College, St. Paul, MN, Sept. 8, 2010.
4. Shah, K. et al. "Engineering unnatural nucleotide specificity for Rous sarcoma virus tyrosine kinase to uniquely label its direct substrates," Proc. Natl. Acad. Sci. USA, 1997,  94, 3565-3570.